3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01375

Details:

PFam ID : PF01375

PFam Domain Description : Heat-labile enterotoxin alpha chain

Number of Sequence in 50% Dataset : 37

Number of Sequence in Full Dataset : 62

Average sequence length: 181.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01375	A4QS87_MAGO7_8_184	72.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01375	A7Y1X7_ECOLX_2_258	100

Sequence based PCA Plot of the family - PF01375 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=21
Motif2 Start=1 Length=8
Motif3 Start=109 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay