3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01374

Details:

PFam ID : PF01374

PFam Domain Description : Glycosyl hydrolase family 46

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 67

Average sequence length: 203.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01374	Q47C49_DECAR_37_236	69.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01374	E1ZJA2_9CHLO_3_235	100

Sequence based PCA Plot of the family - PF01374 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=18 Length=21
Motif3 Start=56 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay