3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01373

Details:

PFam ID : PF01373

PFam Domain Description : Glycosyl hydrolase family 14

Number of Sequence in 50% Dataset : 46

Number of Sequence in Full Dataset : 171

Average sequence length: 333.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01373	B9XRR5_9BACT_61_343	86.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01373	Q01DN0_OSTTA_4_175	100

Sequence based PCA Plot of the family - PF01373 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=267 Length=11
Motif2 Start=107 Length=8
Motif3 Start=28 Length=8
Motif4 Start=221 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay