3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01371

Details:

PFam ID : PF01371

PFam Domain Description : Trp repressor protein

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 294

Average sequence length: 85.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01371	C6YRZ3_FRATT_6_93	23.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01371	C6YRZ3_FRATT_6_93	100

Sequence based PCA Plot of the family - PF01371 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=46 Length=8
Motif4 Start=32 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay