3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01368

Details:

PFam ID : PF01368

PFam Domain Description : DHH family

Number of Sequence in 50% Dataset : 529

Number of Sequence in Full Dataset : 3260

Average sequence length: 167.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01368	A4CG15_9GAMM_12_111	99.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01368	A4CG15_9GAMM_12_111	99.3

Sequence based PCA Plot of the family - PF01368 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=9 Length=20
Motif2 Start=188 Length=8
Motif3 Start=212 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay