3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01367

Details:

PFam ID : PF01367

PFam Domain Description : 5'-3' exonuclease, C-terminal SAM fold

Number of Sequence in 50% Dataset : 37

Number of Sequence in Full Dataset : 1591

Average sequence length: 100.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01367	C4FZB7_ABIDE_210_328	83.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01367	C4FZB7_ABIDE_210_328	100

Sequence based PCA Plot of the family - PF01367 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=38 Length=8
Motif2 Start=93 Length=14
Motif3 Start=12 Length=23

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay