3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01366

Details:

PFam ID : PF01366

PFam Domain Description : Herpesvirus processing and transport protein

Number of Sequence in 50% Dataset : 27

Number of Sequence in Full Dataset : 56

Average sequence length: 521.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01366	PRTP_PSHV1_39_768	92.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01366	TRM1_EHV2_1_639	100

Sequence based PCA Plot of the family - PF01366 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=20 Length=8
Motif2 Start=574 Length=8
Motif3 Start=289 Length=8
Motif4 Start=186 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay