3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01363

Details:

PFam ID : PF01363

PFam Domain Description : FYVE zinc finger

Number of Sequence in 50% Dataset : 247

Number of Sequence in Full Dataset : 1381

Average sequence length: 73.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01363	A0C2E4_PARTE_50_183	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01363	Q4QFL7_LEIMA_28_207	100

Sequence based PCA Plot of the family - PF01363 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=25 Length=17
Motif3 Start=47 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay