3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01356

Details:

PFam ID : PF01356

PFam Domain Description : Alpha amylase inhibitor

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 12

Average sequence length: 59.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01356	IAA_STRAU_3_36	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01356	Q82PK5_STRAW_37_103	100

Sequence based PCA Plot of the family - PF01356 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=23 Length=8
Motif2 Start=14 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay