3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01355

Details:

PFam ID : PF01355

PFam Domain Description : High potential iron-sulfur protein

Number of Sequence in 50% Dataset : 21

Number of Sequence in Full Dataset : 102

Average sequence length: 64.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01355	B6WVK6_9DELT_17_79	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01355	D4GRT1_HALVD_62_132	100

Sequence based PCA Plot of the family - PF01355 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=25 Length=8
Motif4 Start=55 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay