3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01353

Details:

PFam ID : PF01353

PFam Domain Description : Green fluorescent protein

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 152

Average sequence length: 210.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01353	A7S1H3_NEMVE_1_82	80

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01353	Q7Z168_9CNID_1_218	100

Sequence based PCA Plot of the family - PF01353 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=11 Length=8
Motif3 Start=29 Length=11
Motif4 Start=60 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay