3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01352

Details:

PFam ID : PF01352

PFam Domain Description : KRAB box

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 868

Average sequence length: 39.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01352	F2CIY4_STRSA_84_162	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01352	F1SCD4_PIG_14_38	98.1

Sequence based PCA Plot of the family - PF01352 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=30 Length=8
Motif2 Start=1 Length=21

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay