3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01349

Details:

PFam ID : PF01349

PFam Domain Description : Flavivirus RNA-directed RNA polymerase

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 66

Average sequence length: 236.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01349	Q89314_9FLAV_148_251	38.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01349	B5KM05_9FLAV_2259_2510	100

Sequence based PCA Plot of the family - PF01349 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=121 Length=8
Motif2 Start=146 Length=8
Motif3 Start=1 Length=14
Motif4 Start=35 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay