3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01348

Details:

PFam ID : PF01348

PFam Domain Description : Type II intron maturase

Number of Sequence in 50% Dataset : 86

Number of Sequence in Full Dataset : 1975

Average sequence length: 111.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01348	O98715_EUGGA_563_700	89.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01348	Q9G8T4_RHDSA_420_592	98.4

Sequence based PCA Plot of the family - PF01348 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=29 Length=8
Motif2 Start=41 Length=8
Motif3 Start=57 Length=8
Motif4 Start=72 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay