3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01347

Details:

PFam ID : PF01347

PFam Domain Description : Lipoprotein amino terminal region

Number of Sequence in 50% Dataset : 206

Number of Sequence in Full Dataset : 450

Average sequence length: 444.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01347	Q9U5F1_9HEMI_33_832	79.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01347	A8XPS4_CAEBR_280_400	100

Sequence based PCA Plot of the family - PF01347 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=13 Length=8
Motif2 Start=162 Length=8
Motif3 Start=790 Length=11
Motif4 Start=1 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay