3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01346

Details:

PFam ID : PF01346

PFam Domain Description : 1,3-beta-glucan synthase subunit FKS1, domain-1

Number of Sequence in 50% Dataset : 208

Number of Sequence in Full Dataset : 769

Average sequence length: 106.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01346	A6D8C2_9VIBR_25_104	85.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01346	C9LH12_9BACT_10_96	100

Sequence based PCA Plot of the family - PF01346 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=149 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay