3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01345

Details:

PFam ID : PF01345

PFam Domain Description : Domain of unknown function DUF11

Number of Sequence in 50% Dataset : 529

Number of Sequence in Full Dataset : 1962

Average sequence length: 71.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01345	D3E123_METRM_4140_4189	99.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01345	B9LAR8_CHLSY_62_181	100

Sequence based PCA Plot of the family - PF01345 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=27 Length=11
Motif4 Start=45 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay