3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01344

Details:

PFam ID : PF01344

PFam Domain Description : Kelch motif

Number of Sequence in 50% Dataset : 629

Number of Sequence in Full Dataset : 4291

Average sequence length: 45.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01344	C3Y9C1_BRAFL_298_343	93.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01344	A2YPU7_ORYSI_112_156	99.9

Sequence based PCA Plot of the family - PF01344 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=26 Length=8
Motif3 Start=12 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay