3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01341

Details:

PFam ID : PF01341

PFam Domain Description : Glycosyl hydrolases family 6

Number of Sequence in 50% Dataset : 51

Number of Sequence in Full Dataset : 316

Average sequence length: 286.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01341	E0L0Q2_STRVO_316_517	82

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01341	D7C4P1_STRBB_45_168	100

Sequence based PCA Plot of the family - PF01341 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=17 Length=17
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay