3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01340

Details:

PFam ID : PF01340

PFam Domain Description : Met Apo-repressor, MetJ

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 36

Average sequence length: 92.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01340	C5N2G0_STAA3_1_37	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01340	C9P1W6_VIBME_1_70	97.1

Sequence based PCA Plot of the family - PF01340 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay