3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01339

Details:

PFam ID : PF01339

PFam Domain Description : CheB methylesterase

Number of Sequence in 50% Dataset : 124

Number of Sequence in Full Dataset : 1367

Average sequence length: 179.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01339	F0EEW1_9PSED_1_120	88.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01339	D8FVA4_9CYAN_15_230	100

Sequence based PCA Plot of the family - PF01339 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=45 Length=8
Motif2 Start=16 Length=20
Motif3 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay