3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01338

Details:

PFam ID : PF01338

PFam Domain Description : Bacillus thuringiensis toxin

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 29

Average sequence length: 181.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01338	B5LX16_BACTU_1_136	64.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01338	Q8KNU9_BACTI_12_244	100

Sequence based PCA Plot of the family - PF01338 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=114 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay