3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01337

Details:

PFam ID : PF01337

PFam Domain Description : Barstar (barnase inhibitor)

Number of Sequence in 50% Dataset : 135

Number of Sequence in Full Dataset : 343

Average sequence length: 86.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01337	C2PS52_BACCE_9_61	99.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01337	C6AUG9_RHILS_8_106	100

Sequence based PCA Plot of the family - PF01337 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=25 Length=23
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay