3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01336

Details:

PFam ID : PF01336

PFam Domain Description : OB-fold nucleic acid binding domain

Number of Sequence in 50% Dataset : 743

Number of Sequence in Full Dataset : 6293

Average sequence length: 80.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01336	A0RU35_CENSY_28_108	62.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01336	Q5JDQ9_PYRKO_89_216	93.1

Sequence based PCA Plot of the family - PF01336 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=36 Length=8
Motif2 Start=27 Length=8
Motif3 Start=18 Length=8
Motif4 Start=5 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay