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3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01333
Details:

PFam ID : PF01333

PFam Domain Description : Apocytochrome F, C-terminal

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 148

Average sequence length: 116.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF01333E4RJC6_HALSL_923_99260
HMMER Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF01333CYF_SYNJB_191_326100
Sequence based PCA Plot of the family - PF01333 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=44 Length=11
Motif3 Start=61 Length=25
Download PSSM/HMM Models/Alignment:
Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay