3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01333 Details: PFam ID : PF01333 PFam Domain Description : Apocytochrome F, C-terminal Number of Sequence in 50% Dataset : 6 Number of Sequence in Full Dataset : 148 Average sequence length: 116.5 Pairwise Identity of Sequence in 50% Dataset : 31.3 FASSM Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF01333E4RJC6_HALSL_923_99260 HMMER Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF01333CYF_SYNJB_191_326100 Sequence based PCA Plot of the family - PF01333 : BRP of Green color is by FASSM and of Red color is by HMMER PSIMOT-Motifs Extracted using PSIMOT:There are 3 motifsMotif1 Start=1 Length=8Motif2 Start=44 Length=11Motif3 Start=61 Length=25 Download PSSM/HMM Models/Alignment:Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay
PFam ID : PF01333
PFam Domain Description : Apocytochrome F, C-terminal
Number of Sequence in 50% Dataset : 6
Number of Sequence in Full Dataset : 148
Average sequence length: 116.5
Pairwise Identity of Sequence in 50% Dataset : 31.3
BRP of Green color is by FASSM and of Red color is by HMMER