3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01331

Details:

PFam ID : PF01331

PFam Domain Description : mRNA capping enzyme, catalytic domain

Number of Sequence in 50% Dataset : 85

Number of Sequence in Full Dataset : 230

Average sequence length: 167.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01331	F2Y241_9PHYC_265_457	85.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01331	B8C027_THAPS_439_661	100

Sequence based PCA Plot of the family - PF01331 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=8 Length=20
Motif2 Start=140 Length=8
Motif3 Start=127 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay