3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01325

Details:

PFam ID : PF01325

PFam Domain Description : Iron dependent repressor, metal binding and dimerisation domain

Number of Sequence in 50% Dataset : 60

Number of Sequence in Full Dataset : 844

Average sequence length: 59.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01325	E6N7Y8_9ARCH_6_58	64.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01325	A9NG79_ACHLI_1_61	100

Sequence based PCA Plot of the family - PF01325 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=38 Length=8
Motif3 Start=21 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay