3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01323

Details:

PFam ID : PF01323

PFam Domain Description : DSBA-like thioredoxin domain

Number of Sequence in 50% Dataset : 481

Number of Sequence in Full Dataset : 1955

Average sequence length: 177.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01323	D7CR52_TRURR_96_202	91.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01323	D0WKT4_9ACTO_219_296	99.8

Sequence based PCA Plot of the family - PF01323 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=24 Length=8
Motif2 Start=1 Length=8
Motif3 Start=15 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay