3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01322

Details:

PFam ID : PF01322

PFam Domain Description : Cytochrome C'

Number of Sequence in 50% Dataset : 136

Number of Sequence in Full Dataset : 311

Average sequence length: 112.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01322	A0Y7T7_9GAMM_102_152	95.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01322	Q11EA2_MESSB_38_166	100

Sequence based PCA Plot of the family - PF01322 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=51 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay