3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01321

Details:

PFam ID : PF01321

PFam Domain Description : Creatinase/Prolidase N-terminal domain

Number of Sequence in 50% Dataset : 656

Number of Sequence in Full Dataset : 2587

Average sequence length: 134.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01321	B2JXT4_BURP8_27_170	82.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01321	B2JXT4_BURP8_27_170	99.8

Sequence based PCA Plot of the family - PF01321 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=13 Length=8
Motif3 Start=26 Length=8
Motif4 Start=46 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay