3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01320

Details:

PFam ID : PF01320

PFam Domain Description : Colicin immunity protein / pyocin immunity protein

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 84

Average sequence length: 79.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01320	B0KQC9_PSEPG_1_87	38.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01320	B0KQC9_PSEPG_1_87	100

Sequence based PCA Plot of the family - PF01320 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=9 Length=17
Motif2 Start=76 Length=11
Motif3 Start=45 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay