3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01316

Details:

PFam ID : PF01316

PFam Domain Description : Arginine repressor, DNA binding domain

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 581

Average sequence length: 68.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01316	D9WF30_9ACTO_1_42	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01316	A4C4K1_9GAMM_2_72	100

Sequence based PCA Plot of the family - PF01316 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=6 Length=8
Motif3 Start=39 Length=8
Motif4 Start=19 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay