3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01315

Details:

PFam ID : PF01315

PFam Domain Description : Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain

Number of Sequence in 50% Dataset : 135

Number of Sequence in Full Dataset : 1951

Average sequence length: 107.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01315	D9WF30_9ACTO_1_42	83.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01315	D7CFF6_STRBB_14_145	100

Sequence based PCA Plot of the family - PF01315 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=21 Length=8
Motif2 Start=103 Length=11
Motif3 Start=124 Length=8
Motif4 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay