3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01314

Details:

PFam ID : PF01314

PFam Domain Description : Aldehyde ferredoxin oxidoreductase, domains 2 & 3

Number of Sequence in 50% Dataset : 151

Number of Sequence in Full Dataset : 560

Average sequence length: 363.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01314	B9M973_GEOSF_250_709	95.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01314	B9M973_GEOSF_250_709	100

Sequence based PCA Plot of the family - PF01314 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=31 Length=8
Motif2 Start=125 Length=8
Motif3 Start=277 Length=8
Motif4 Start=74 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay