3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01313

Details:

PFam ID : PF01313

PFam Domain Description : Bacterial export proteins, family 3

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 677

Average sequence length: 75.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01313	B5Y7F4_COPPD_3_78	42.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01313	A6GCF0_9DELT_4_79	100

Sequence based PCA Plot of the family - PF01313 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay