3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01312

Details:

PFam ID : PF01312

PFam Domain Description : FlhB HrpN YscU SpaS Family

Number of Sequence in 50% Dataset : 229

Number of Sequence in Full Dataset : 1138

Average sequence length: 253.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01312	A1R0C5_BORT9_1_79	84.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01312	Q1NCU7_9SPHN_6_360	100

Sequence based PCA Plot of the family - PF01312 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=46 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay