3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01311

Details:

PFam ID : PF01311

PFam Domain Description : Bacterial export proteins, family 1

Number of Sequence in 50% Dataset : 248

Number of Sequence in Full Dataset : 806

Average sequence length: 238.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01311	Q5FQT0_GLUOX_22_281	94.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01311	Q5FQT0_GLUOX_22_281	100

Sequence based PCA Plot of the family - PF01311 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=9 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay