3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01310

Details:

PFam ID : PF01310

PFam Domain Description : Adenovirus hexon associated protein, protein VIII

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 42

Average sequence length: 192.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01310	C3SAV3_9ADEN_1_218	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01310	C3SAV3_9ADEN_1_218	100

Sequence based PCA Plot of the family - PF01310 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=6 Length=20
Motif2 Start=196 Length=8
Motif3 Start=185 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay