3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01308

Details:

PFam ID : PF01308

PFam Domain Description : Chlamydia major outer membrane protein

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 85

Average sequence length: 229.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01308	Q53266_CHLTR_87_132	27.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01308	Q9AG11_CHLPN_1_92	94.0

Sequence based PCA Plot of the family - PF01308 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=38 Length=8
Motif2 Start=6 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay