3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01304

Details:

PFam ID : PF01304

PFam Domain Description : Gas vesicles protein GVPc repeated domain

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 39

Average sequence length: 32.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01304	A8GZH3_SHEPA_34_146	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01304	D8G729_9CYAN_51_83	100

Sequence based PCA Plot of the family - PF01304 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay