3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01302

Details:

PFam ID : PF01302

PFam Domain Description : CAP-Gly domain

Number of Sequence in 50% Dataset : 45

Number of Sequence in Full Dataset : 688

Average sequence length: 68.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01302	B0CNT6_LACBS_8_63	61.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01302	A9UR15_MONBE_9_110	100

Sequence based PCA Plot of the family - PF01302 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=32 Length=8
Motif3 Start=14 Length=8
Motif4 Start=44 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay