3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01301

Details:

PFam ID : PF01301

PFam Domain Description : Glycosyl hydrolases family 35

Number of Sequence in 50% Dataset : 135

Number of Sequence in Full Dataset : 765

Average sequence length: 261.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01301	A5BKJ8_VITVI_59_121	92.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01301	C0AE14_9BACT_269_402	100

Sequence based PCA Plot of the family - PF01301 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=130 Length=8
Motif3 Start=11 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay