3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01300

Details:

PFam ID : PF01300

PFam Domain Description : Telomere recombination

Number of Sequence in 50% Dataset : 210

Number of Sequence in Full Dataset : 2481

Average sequence length: 175.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01300	D3EPM3_UCYNA_1_61	76.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01300	Q4T011_TETNG_1_67	100

Sequence based PCA Plot of the family - PF01300 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=36 Length=18
Motif2 Start=6 Length=17
Motif3 Start=70 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay