3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01299

Details:

PFam ID : PF01299

PFam Domain Description : Lysosome-associated membrane glycoprotein (Lamp)

Number of Sequence in 50% Dataset : 96

Number of Sequence in Full Dataset : 191

Average sequence length: 233.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01299	E4WWE4_OIKDI_194_370	90.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01299	B4DWL3_HUMAN_24_126	99.4

Sequence based PCA Plot of the family - PF01299 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=196 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay