3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01298

Details:

PFam ID : PF01298

PFam Domain Description : Transferrin binding protein-like solute binding protein

Number of Sequence in 50% Dataset : 87

Number of Sequence in Full Dataset : 328

Average sequence length: 418.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01298	A4NW77_HAEIF_1_153	91.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01298	C6SH76_NEIME_1_313	98.7

Sequence based PCA Plot of the family - PF01298 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=91 Length=8
Motif2 Start=136 Length=8
Motif3 Start=186 Length=8
Motif4 Start=227 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay