3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01296

Details:

PFam ID : PF01296

PFam Domain Description : Galanin

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 20

Average sequence length: 23.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01296	C3V8R3_CHICK_33_51	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01296	Q7ZT88_CARAU_1_26	94.7

Sequence based PCA Plot of the family - PF01296 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay