3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01295

Details:

PFam ID : PF01295

PFam Domain Description : Adenylate cyclase, class-I

Number of Sequence in 50% Dataset : 35

Number of Sequence in Full Dataset : 118

Average sequence length: 526.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01295	C0ARX5_9ENTR_1_131	97.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01295	A0Y9E5_9GAMM_240_857	100

Sequence based PCA Plot of the family - PF01295 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=11 Length=28
Motif2 Start=273 Length=8
Motif3 Start=98 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay