3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01290

Details:

PFam ID : PF01290

PFam Domain Description : Thymosin beta-4 family

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 192

Average sequence length: 39.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01290	C3XWB1_BRAFL_39_81	25

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01290	B3RYS5_TRIAD_2_32	94.2

Sequence based PCA Plot of the family - PF01290 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=22 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay