3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01289

Details:

PFam ID : PF01289

PFam Domain Description : Thiol-activated cytolysin

Number of Sequence in 50% Dataset : 42

Number of Sequence in Full Dataset : 80

Average sequence length: 313.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01289	C1CWG1_DEIDV_166_381	80.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01289	B1IB03_STRPI_23_129	100

Sequence based PCA Plot of the family - PF01289 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=4 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay