3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01288

Details:

PFam ID : PF01288

PFam Domain Description : 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)

Number of Sequence in 50% Dataset : 123

Number of Sequence in Full Dataset : 1420

Average sequence length: 125.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01288	A8G155_SHESH_1_88	92.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01288	F2AV16_RHOBA_37_198	100

Sequence based PCA Plot of the family - PF01288 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=36 Length=8
Motif2 Start=11 Length=8
Motif3 Start=53 Length=14
Motif4 Start=101 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay